Every user can create any number of its own custom report templates. Each template is a jasper report - file with jrxml extension. You can create this file by hand or use any of Jasper designers.
Step-by-step guide
For managing your templates choose Smart Reports from main JIRA menu and then Manage templates
For adding your new template - click Add new template when on managing templates view. Then, upload Jasprer jrxml file
After upload proper jrxml file - you will se new report template
You can delete unneeded templates when needed as well.
For creating templates in jrxml files please read our knowledge base here or go through tutorial.